Day 4

Morning

• Lecture: Differential abundance and differential expression testing
• Practical work: Calculation and visualisation of differentially expressed genes
  • Download the example dataset, in vitro stimulated PBMCs from Kang et al. (2018)
  • differential gene expression exercise - python
  • differential gene expression exercise - R

Afternoon

• Lecture: Combining datasets with batch correction methods (integration)
• Practical work: Data integration exercise