Day 1

Morning

• Lecture: Introduction to single cell data generation and resulting raw data
• Info: How to obtain access to the Charité HPC and take first steps on it (for Charité members)
• Task: All participants apply for cluster access.
• Live demo: How to install and run cellranger on the cluster
• Group work: Inspect and understand a cellranger QC report (right click - save link as - and open locally in your browser for proper rendering)

Afternoon

• Practical work: Setting up a data analysis environment
  • Installation instructions for python using jupyter notebooks
  • Installation instructions for R using RStudio
• Practical work: Basic introduction to data analysis with R/python using the penguin dataset